RNAi Phenotypes

rnaiPhenotypes(version = NULL, dir = ".", progress = FALSE)

Arguments

version

string or NULL. WormBase version. If NULL (recommended), defaults to current production release version available on the WormBase website. Legacy versions can be specified as a string (e.g. "WS262").

dir

string. Output directory.

progress

boolean. Show progress using pbapply package.

Value

tbl_df.

Examples

x <- rnaiPhenotypes(progress = FALSE)
#> Transmitting files from ftp.wormbase.org.
#> Files matching pattern: #> [1] "rnai_phenotypes_quick.WS267.wb"
#> Downloading rnai_phenotypes_quick.WS267.wb.gz.
#> Parsed with column specification: #> cols( #> geneID = col_character(), #> sequence = col_character(), #> rnaiPhenotypes = col_character() #> )
glimpse(x)
#> Observations: 8,116 #> Variables: 2 #> $ geneID <chr> "WBGene00001908", "WBGene00019433", "WBGene00002090"... #> $ rnaiPhenotypes <list> [<"accumulated cell corpses", "anaphase bridging", ...