Parameterized Fast GSEA

pfgsea extends the functionality of fgsea. The package is designed to quickly perform multiple GSEA comparisons on RNA-seq differential expression results.

Installation

This is an R package.

Bioconductor method

We recommend installing the package with BiocManager.

if (!require("BiocManager")) {
    install.packages("BiocManager")
}
BiocManager::install("remotes")
BiocManager::install("steinbaugh/pfgsea")