All functions

assignAndSaveData()

Assign and save data

atomize(<data.frame>) atomize(<DataFrame>) atomize(<GRanges>)

Atomize

basenameSansExt()

Base name without the file extension

compressExtPattern

Compression extension pattern

decode(<DataFrame>) decode(<GRanges>)

Decode column data that uses run-length encoding

dots()

Extract dots from function

encode(<DataFrame>) encode(<GRanges>)

Encode using run-length encoding

export(<ANY>) export(<sparseMatrix>) export(<SummarizedExperiment>) export(<SingleCellExperiment>)

Export

extPattern

File extension pattern

factorize(<ANY>)

Factorize

fileExt()

File extension

import()

Import

initDir()

Initialize Directory

loadData()

Load data

loadDataAsName()

Load data as name

loadRemoteData()

Load remote data

localOrRemoteFile()

Dynamically handle a local or remote file path

naStrings

NA strings

pasteURL()

Concatenate strings to form a URL

rdataExtPattern

R data extension pattern

rdataLoadError

R data load error

realpath()

Express file paths in canonical form

saveData()

Save data

transmit()

Transmit files from a remote FTP server

writeCounts()

Write counts