Look up gene synonyms from NCBI.

geneSynonyms(organism)

Arguments

organism

character(1). Supported organisms:

  • Homo sapiens

  • Mus musculus,

  • Drosophila melanogaster.

Value

grouped_df. Grouped by geneID column.

Note

Synonym support for Caenorhabditis elegans is poor on NCBI. Use the wormbase package instead.

Examples

options(basejump.test = TRUE) x <- geneSynonyms(organism = "Homo sapiens") print(x)
#> # A tibble: 8 x 3 #> # Groups: geneID [8] #> geneID geneName synonyms #> <chr> <chr> <chr> #> 1 ENSG00000114771 AADAC CES5A1, DAC #> 2 ENSG00000121410 A1BG A1B, ABG, GAB, HYST2477 #> 3 ENSG00000129673 AANAT DSPS, SNAT #> 4 ENSG00000156006 NAT2 AAC2, NAT-2, PNAT #> 5 ENSG00000171428 NAT1 AAC1, MNAT, NAT-1, NATI #> 6 ENSG00000175899 A2M A2MD, CPAMD5, FWP007, S863-7 #> 7 ENSG00000196136 SERPINA3 AACT, ACT, GIG24, GIG25 #> 8 ENSG00000256069 A2MP1 A2MP