Minimal DESeq2 differential expression analysis.

deseq

Format

An object of class DESeqAnalysis of length 1.

Examples

data(deseq) deseq
#> DESeqAnalysis 0.1.8; DESeq2 1.22.2 #> data: #> dim: 500 12 #> metadata(3): version date interestingGroups #> assays(4): counts mu H cooks #> rownames(500): gene001 gene002 ... gene499 gene500 #> rowData names(27): geneID geneName ... deviance maxCooks #> colnames(12): sample01 sample02 ... sample11 sample12 #> colData names(2): condition sizeFactor #> transform: varianceStabilizingTransformation #> results: condition_B_vs_A #> lfcShrink: apeglm